MolNFT v1 · #146644 · protein
Endo-fucoidan hydrolase MFFCNA9 from glycoside hydrolase family 107
6DNS · Alpha-1,4-endofucoidanase: “Endo-fucoidan hydrolase MFFCNA9 from glycoside hydrolase family 107”. X-ray diffraction, 1 ligand (CA), 4 pockets (best druggability 0.62). MolNFT v1 #146644 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6DNS
- Type
- protein
- Length
- 590 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-1,4-endofucoidanase
- UniProt
- Q08I46
- Ligands
- CA
- Pockets
- 4 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-1,4-endofucoidanase | protein | 590 | 24% helix, 25% strand | Q08I46 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 572 | 0.62 | 0.74 | 52 | empty |
| 2 | 336 | 0.53 | 0.74 | 50 | CA |
| 3 | 176 | 0.51 | 0.78 | 28 | EDO |
| 4 | 200 | 0.48 | 0.76 | 26 | CA |
Compared structures
- 6DNS · Endo-fucoidan hydrolase MfFcnA9 from glycoside hydrolase family 107 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08I46
- Elsewhere: RCSB PDB 6DNS · PDBe 6DNS · UniProt Q08I46
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