MolNFT v1 · #146411 · protein

Cronobacter turicensis bdsf synthase rpff in complex with the rpfr quorum-sensing receptor fi domain

6DGN: “Cronobacter turicensis bdsf synthase rpff in complex with the rpfr quorum-sensing receptor fi domain”. X-ray diffraction, 1 ligand (PO4), 3 pockets (best druggability 0.59). MolNFT v1 #146411 on GenesisL1: 3D structure, binding…

PDB: 6DGN
Type: protein
Length: 367 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rpff; Rpfr
UniProt: A2W0S6, C9XTL5
Ligands: PO4
Pockets: 3 · best druggability 0.59

Structure

x-ray diffraction · 2 distinct chains · 44% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rpff	protein	276	53% helix, 17% strand	A2W0S6
B	Rpfr	protein	91	15% helix, 49% strand	C9XTL5

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A
GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	203	0.59	0.80	33	GOL
2	97	0.39	0.76	20	GOL
3	113	0.37	0.74	20	empty

Interfaces

1 interface between chains.

A–B · 397 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

6DGN · Cronobacter turicensis BDSF synthase RpfF in complex with the RpfR quorum-sensing… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A2W0S6
Every structure of UniProt C9XTL5
Elsewhere: RCSB PDB 6DGN · PDBe 6DGN · UniProt A2W0S6 · UniProt C9XTL5

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