Research workbench
Cronobacter turicensis bdsf synthase rpff in complex with the rpfr quorum-sensing receptor fi domain
Analyse Cronobacter turicensis bdsf synthase rpff in complex with the rpfr… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DGN
- Type
- protein
- Length
- 367 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rpff; Rpfr
- UniProt
- A2W0S6, C9XTL5
- Ligands
- PO4
- Pockets
- 3 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rpff | protein | 276 | 53% helix, 17% strand | A2W0S6 |
| B | Rpfr | protein | 91 | 15% helix, 49% strand | C9XTL5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 203 | 0.59 | 0.80 | 33 | GOL |
| 2 | 97 | 0.39 | 0.76 | 20 | GOL |
| 3 | 113 | 0.37 | 0.74 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 397 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6DGN · Cronobacter turicensis BDSF synthase RpfF in complex with the RpfR quorum-sensing… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A2W0S6
- Every structure of UniProt C9XTL5
- Elsewhere: RCSB PDB 6DGN · PDBe 6DGN · UniProt A2W0S6 · UniProt C9XTL5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.