MolNFT v1 · #146410 · protein
Streptococcus pyogenes phosphoglycerol transferase gach in complex with sn-glycerol-1-phosphate
6DGM: “Streptococcus pyogenes phosphoglycerol transferase gach in complex with sn-glycerol-1-phosphate”. X-ray diffraction, 3 ligands (1GP, MN, CA). MolNFT v1 #146410 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DGM
- Type
- protein
- Length
- 763 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9A0F9
- Ligands
- 1GP, MN, CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 381 | — | Q9A0F9 |
| B | — | protein | 382 | — | Q9A0F9 |
Ligands and binding sites
- 1GP · Sn-glycerol-1-phosphate · ligand · 2 copies · chains A, B
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DGM · Streptococcus pyogenes phosphoglycerol transferase GacH in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9A0F9
- Elsewhere: RCSB PDB 6DGM · PDBe 6DGM · UniProt Q9A0F9
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