MolNFT v1 · #146367 · protein + DNA
Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific kaiso binding sequence (kbs) with a T-to-U substitution
6DFC: “Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific kaiso binding sequence (kbs) with…”. X-ray diffraction, 2 ligands (ZN, CL). MolNFT v1 #146367 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DFC
- Type
- protein + DNA
- Length
- 153 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q86T24
- Ligands
- ZN, CL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 117 | — | Q86T24 |
| D | — | dna | 18 | — | — |
| E | — | dna | 18 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DFC · Kaiso (ZBTB33) zinc finger DNA binding domain in complex with the specific Kaiso binding… · the same entry in another collection · chain A against A, TM-score 1.00
- Q86T24 · AlphaFold monomer V2.0 prediction for transcriptional regulator kaiso (Q86T24) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q86T24
- Elsewhere: RCSB PDB 6DFC · PDBe 6DFC · UniProt Q86T24
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