MolNFT v1 · #145994 · protein
Cell surface receptor with bound ligand at 1.75-a resolution
6D4A: “Cell surface receptor with bound ligand at 1.75-a resolution”. X-ray diffraction, 1 ligand (FVP). MolNFT v1 #145994 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6D4A
- Type
- protein
- Length
- 247 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P20138
- Ligands
- FVP
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 123 | — | P20138 |
| B | — | protein | 124 | — | P20138 |
Ligands and binding sites
- FVP · 2-aminoethyl 5-{[(4-cyclohexyl-1H-1,2,3-triazol-1-yl) acetyl]amino}-3,5,9-trideoxy-9-[(4-hydroxy-3,5-dimethylbenzene-1-carbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranonosyl-(2->6)-beta-D-galactopyranosyl-(1->4)-beta-D-glucopyranoside · ligand · 2 copies · chains A, B
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6D4A · Cell Surface Receptor with Bound Ligand at 1.75-A Resolution · the same entry in another collection · chain A against A, TM-score 1.00
- P20138 · AlphaFold monomer V2.0 prediction for myeloid cell surface antigen CD33 (P20138) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P20138
- Elsewhere: RCSB PDB 6D4A · PDBe 6D4A · UniProt P20138
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