MolNFT v1 · #145962 · protein

Influenza virus neuraminidase subtype N9 (tern) apo form

6D3B: “Influenza virus neuraminidase subtype N9 (tern) apo form”. X-ray diffraction, 4 ligands (MAN, NAG, BMA), 1 pocket (best druggability 0.61). MolNFT v1 #145962 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6D3B
Type: protein
Length: 389 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Neuraminidase
EC: 3.2.1.18
UniProt: P03472
Ligands: MAN, NAG, BMA, CA
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Neuraminidase (EC 3.2.1.18)	protein	389	3% helix, 44% strand	P03472

Ligands and binding sites

MAN · alpha-D-mannopyranose · sugar · 6 copies
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
BMA · beta-D-mannopyranose · sugar
CA · Calcium ion · metal · 2 copies · chains A
GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	282	0.61	0.79	39	empty

Modifications

Observed in the structure: 9 disulfide, 3 glycan (disulfide, N-glycosylation).

Compared structures

6D3B · Influenza virus neuraminidase subtype N9 (tern) apo form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03472
Elsewhere: RCSB PDB 6D3B · PDBe 6D3B · UniProt P03472

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