MolNFT v1 · #14567 · protein
High resolution solution NMR structure of mixed disulfide intermediate between mutant human thioredoxin and a 13 residue peptide comprising its target site in human nfkb
1MDI: “High resolution solution NMR structure of mixed disulfide intermediate between mutant human thioredoxin and a…”. Solution nmr. MolNFT v1 #14567 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1MDI
- Type
- protein
- Length
- 118 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thioredoxin; Target site in human nfkb
- UniProt
- P10599, P19838
Structure
solution nmr · 2 distinct chains · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thioredoxin | protein | 105 | 38% helix, 27% strand | P10599 |
| B | Target site in human nfkb | protein | 13 | 0% helix, 8% strand | P19838 |
Interfaces
1 interface between chains.
- A–B · 694 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1MDI · High resolution solution NMR structure of mixed disulfide intermediate between mutant… · the same entry in another collection · chain A against A, TM-score 1.00
- P10599 · AlphaFold monomer V2.0 prediction for thioredoxin (P10599) · a predicted model of the same protein · chain A against A, TM-score 0.93
- P19838 · AlphaFold monomer V2.0 prediction for nuclear factor nf-kappa-B P105 subunit (P19838) · a predicted model of the same protein · chain B against A, TM-score 0.26
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P10599
- Every structure of UniProt P19838
- Elsewhere: RCSB PDB 1MDI · PDBe 1MDI · UniProt P10599 · UniProt P19838
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