MolNFT v1 · #145548 · protein + DNA
Ternary complex crystal structure of DNA polymerase beta with a dideoxy terminated primer with CCL2, beta, gamma datp analogue
6CRC: “Ternary complex crystal structure of DNA polymerase beta with a dideoxy terminated primer with CCL2, beta…”. X-ray diffraction, 3 ligands (VA7, NA, MG). MolNFT v1 #145548 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CRC
- Type
- protein + DNA
- Length
- 358 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P06746
- Ligands
- VA7, NA, MG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 327 | — | P06746 |
| T | — | dna | 16 | — | — |
| P | — | dna | 10 | — | — |
| D | — | dna | 5 | — | — |
Ligands and binding sites
- VA7 · 2'-deoxy-5'-O-[(R)-{[(R)-[dichloro(phosphono) methyl](hydroxy)phosphoryl]oxy}(hydroxy) phosphoryl]adenosine · ligand · chains A, T, P
- NA · Sodium ion · metal · 3 copies · chains A, P, D
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CRC · Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer… · the same entry in another collection · chain A against A, TM-score 1.00
- P06746 · AlphaFold monomer V2.0 prediction for DNA polymerase beta (P06746) · a predicted model of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06746
- Elsewhere: RCSB PDB 6CRC · PDBe 6CRC · UniProt P06746
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