MolNFT v1 · #145408 · protein
High-resolution structure of CLPC1-ntd binding to rufomycin-I
6CN8 · ATP-dependent clp protease ATP-binding subunit CLPC1: “High-resolution structure of CLPC1-ntd binding to rufomycin-I”. X-ray diffraction, 3 ligands (NA, CL, PO4). MolNFT v1 #145408 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6CN8
- Type
- protein
- Length
- 159 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP-dependent clp protease ATP-binding subunit CLPC1; Rufomycin I
- UniProt
- P9WPC9
- Ligands
- NA, CL, PO4
Structure
x-ray diffraction · 2 distinct chains · 67% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP-dependent clp protease ATP-binding subunit CLPC1 | protein | 152 | 70% helix, 3% strand | P9WPC9 |
| B | Rufomycin I | protein | 7 | 0% helix, 14% strand | — |
Ligands and binding sites
- NA · Sodium ion · metal · 4 copies · chains A
- CL · Chloride ion · ion · 4 copies · chains A, B
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 589 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 5 modified (nonstandard).
Compared structures
- 6CN8 · High-resolution structure of ClpC1-NTD binding to Rufomycin-I · the same entry in another collection · chain A against A, TM-score 1.00
- P9WPC9 · AlphaFold monomer V2.0 prediction for ATP-dependent clp protease ATP- binding subunit… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WPC9
- Elsewhere: RCSB PDB 6CN8 · PDBe 6CN8 · UniProt P9WPC9
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