MolNFT v1 · #145258 · protein

PYRUVATE:FERREDOXIN oxidoreductase from moorella thermoacetica with acetyl-tpp bound

6CIP: “PYRUVATE:FERREDOXIN oxidoreductase from moorella thermoacetica with acetyl-tpp bound”. X-ray diffraction, 4 ligands (SF4, HTL, MG). MolNFT v1 #145258 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6CIP
Type: protein
Length: 6,990 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q2RMD6
Ligands: SF4, HTL, MG, SO4

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	1165	—	Q2RMD6
C	—	protein	1163	—	Q2RMD6
D, E	—	protein	1164	—	Q2RMD6
F	—	protein	1169	—	Q2RMD6

Ligands and binding sites

SF4 · Iron/sulfur cluster · ligand · 18 copies · chains A, B, C, D, E, F
HTL · 2-acetyl-thiamine diphosphate · ligand · 6 copies · chains A, B, C, D, E, F
MG · Magnesium ion · metal · 6 copies · chains A, B, C, D, E, F
SO4 · Sulfate ion · ion · 7 copies · chains A, B, C, D, E, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6CIP · Pyruvate:ferredoxin oxidoreductase from Moorella thermoacetica with acetyl-TPP bound · the same entry in another collection · chain F against F, TM-score 1.00
Q2RMD6 · AlphaFold monomer V2.0 prediction for PYRUVATE:FERREDOXIN oxidoreductase (Q2RMD6) · a predicted model of the same protein · chain C against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2RMD6
Elsewhere: RCSB PDB 6CIP · PDBe 6CIP · UniProt Q2RMD6

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