MolNFT v1 · #145253 · protein + DNA
Pre-reaction complex, RAG1(E962Q)/2-INTACT/NICKED 12/23RSS complex in MN2+
6CIK: “Pre-reaction complex, RAG1(E962Q)/2-INTACT/NICKED 12/23RSS complex in MN2+”. X-ray diffraction, 2 ligands (ZN, MN). MolNFT v1 #145253 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CIK
- Type
- protein + DNA
- Length
- 2,147 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P15919, P21784, P09429
- Ligands
- ZN, MN
Structure
x-ray diffraction · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 607 | — | P15919 |
| B | — | protein | 341 | — | P21784 |
| C | — | protein | 602 | — | P15919 |
| D | — | protein | 335 | — | P21784 |
| N | — | protein | 90 | — | P09429 |
| F | — | dna | 35 | — | — |
| I | — | dna | 35 | — | — |
| G | — | dna | 51 | — | — |
| J | — | dna | 12 | — | — |
| M | — | dna | 39 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, C
- MN · Manganese (II) ion · metal · 2 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CIK · Pre-Reaction Complex, RAG1(E962Q)/2-intact/nicked 12/23RSS complex in Mn2+ · the same entry in another collection · chain M against M, TM-score 1.00
- P21784 · AlphaFold monomer V2.0 prediction for V(D)J recombination-activating protein 2 (P21784) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15919
- Every structure of UniProt P21784
- Every structure of UniProt P09429
- Elsewhere: RCSB PDB 6CIK · PDBe 6CIK · UniProt P15919 · UniProt P21784 · UniProt P09429
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