MolNFT v1 · #145139 · protein

Crystal structure of soluble lytic transglycosylase CJ0843 of campylobacter jejuni at 2.3A resolution in I23 space group

6CF9: “Crystal structure of soluble lytic transglycosylase CJ0843 of campylobacter jejuni at 2.3A resolution in I23…”. X-ray diffraction, 6 pockets (best druggability 0.64). MolNFT v1 #145139 on GenesisL1: 3D structure, binding sites and…

PDB: 6CF9
Type: protein
Length: 516 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lytic transglycosylase
UniProt: A0A1L7J388
Pockets: 6 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 61% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lytic transglycosylase	protein	516	61% helix, 1% strand	A0A1L7J388

Ligands and binding sites

ACT · Acetate ion · additive · 2 copies · chains A
PG0 · 2-(2-methoxyethoxy)ethanol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	362	0.64	0.79	35	ACT
2	160	0.46	0.76	26	empty
3	54	0.39	0.80	14	empty
4	115	0.38	0.74	18	empty
5	70	0.32	0.74	18	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6CF9 · Crystal structure of soluble lytic transglycosylase Cj0843 of Campylobacter jejuni at… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1L7J388
Elsewhere: RCSB PDB 6CF9 · PDBe 6CF9 · UniProt A0A1L7J388

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