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Crystal structure of soluble lytic transglycosylase CJ0843 of campylobacter jejuni at 2.3A resolution in I23 space group

Analyse Crystal structure of soluble lytic transglycosylase CJ0843 of campylobacter… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6CF9
Type: protein
Length: 516 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lytic transglycosylase
UniProt: A0A1L7J388
Pockets: 6 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 61% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lytic transglycosylase	protein	516	61% helix, 1% strand	A0A1L7J388

Ligands and binding sites

ACT · Acetate ion · additive · 2 copies · chains A
PG0 · 2-(2-methoxyethoxy)ethanol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	362	0.64	0.79	35	ACT
2	160	0.46	0.76	26	empty
3	54	0.39	0.80	14	empty
4	115	0.38	0.74	18	empty
5	70	0.32	0.74	18	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6CF9 · Crystal structure of soluble lytic transglycosylase Cj0843 of Campylobacter jejuni at… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

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Every structure of UniProt A0A1L7J388
Elsewhere: RCSB PDB 6CF9 · PDBe 6CF9 · UniProt A0A1L7J388

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