MolNFT v1 · #145108 · protein
Crystal structure of fragment 3-(3-methyl-4-oxo-3,4-dihydroquinazolin- 2-YL)PROPANOIC acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain
6CED: “Crystal structure of fragment 3-(3-methyl-4-oxo-3,4-dihydroquinazolin- 2-YL)PROPANOIC acid bound in the…”. X-ray diffraction, 3 ligands (EYA, ZN, UNX). MolNFT v1 #145108 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CED
- Type
- protein
- Length
- 99 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UBN7
- Ligands
- EYA, ZN, UNX
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 99 | — | Q9UBN7 |
Ligands and binding sites
- EYA · 3-(3-methyl-4-oxo-3,4-dihydroquinazolin-2-yl)propanoic acid · ligand · chains A
- ZN · Zinc ion · metal · 3 copies · chains A
- UNX · Unknown atom or ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CED · Crystal structure of fragment 3-(3-Methyl-4-oxo-3,4-dihydroquinazolin-2-yl)propanoic acid… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UBN7 · AlphaFold monomer V2.0 prediction for histone deacetylase 6 (Q9UBN7) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBN7
- Elsewhere: RCSB PDB 6CED · PDBe 6CED · UniProt Q9UBN7
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