MolNFT v1 · #145071 · protein
Crystal structure of APH(2")-iva in complex with plazomicin
6CD7: “Crystal structure of APH(2")-iva in complex with plazomicin”. X-ray diffraction, 2 ligands (EDS, CL). MolNFT v1 #145071 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6CD7
- Type
- protein
- Length
- 597 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O68183
- Ligands
- EDS, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 299 | — | O68183 |
| B | — | protein | 298 | — | O68183 |
Ligands and binding sites
- EDS · (2S)-4-amino-N-[(1R,2S,3S,4R,5S)-5-amino-4-{[(2S,3R)-3-amino-6-{[(2-hydroxyethyl)amino]methyl}-3,4-dihydro-2H-pyran-2-yl]oxy}-2-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-3-hydroxycyclohexyl]-2-hydroxybutanamide · ligand · chains B
- CL · Chloride ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6CD7 · Crystal structure of APH(2)-IVa in complex with plazomicin" · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O68183
- Elsewhere: RCSB PDB 6CD7 · PDBe 6CD7 · UniProt O68183
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