MolNFT v1 · #145058 · protein
Complex between a GID4 fragment and a short peptide
6CCU · Glucose-induced degradation protein 4 homolog: “Complex between a GID4 fragment and a short peptide”. X-ray diffraction, 1 ligand (UNX), 1 pocket (best druggability 0.44). MolNFT v1 #145058 on GenesisL1: 3D structure, binding sites…
- PDB
- 6CCU
- Type
- protein
- Length
- 168 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucose-induced degradation protein 4 homolog; Short peptide
- UniProt
- Q8IVV7
- Ligands
- UNX
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 2 distinct chains · 14% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucose-induced degradation protein 4 homolog | protein | 164 | 15% helix, 47% strand | Q8IVV7 |
| B | Short peptide | protein | 4 | 0% helix, 50% strand | — |
Ligands and binding sites
- UNX · Unknown atom or ion · ion · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.44 | 0.77 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 375 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6CCU · Complex between a GID4 fragment and a short peptide · the same entry in another collection · chain A against A, TM-score 1.00
- Q8IVV7 · AlphaFold monomer V2.0 prediction for glucose-induced degradation protein 4 homolog… · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IVV7
- Elsewhere: RCSB PDB 6CCU · PDBe 6CCU · UniProt Q8IVV7
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