MolNFT v1 · #144785 · protein
Ligand bound full length hugdh with A104L substitution
6C4J: “Ligand bound full length hugdh with A104L substitution”. X-ray diffraction, 4 ligands (NAD, UPG, CL). MolNFT v1 #144785 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6C4J
- Type
- protein
- Length
- 5,483 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O60701
- Ligands
- NAD, UPG, CL, SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 426 | — | O60701 |
| B, C, D, E, F, G, I, K, L | — | protein | 460 | — | O60701 |
| H | — | protein | 459 | — | O60701 |
| J | — | protein | 458 | — | O60701 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 12 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
- UPG · Uridine-5'-diphosphate-glucose · ligand · 12 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
- CL · Chloride ion · ion · 13 copies · chains A, B, D, G, H, I, J, K, L
- SO4 · Sulfate ion · ion · 8 copies · chains C, D, E, F, B, G, K, L
- PGO · S-1,2-propanediol · additive · 6 copies · chains C, D, E, F, G, H, K, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6C4J · Ligand bound full length hUGDH with A104L substitution · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O60701
- Elsewhere: RCSB PDB 6C4J · PDBe 6C4J · UniProt O60701
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