MolNFT v1 · #144783 · protein
Plasmepsin V from plasmodium vivax bound to a transition state mimetic (wehi-601)
6C4G: “Plasmepsin V from plasmodium vivax bound to a transition state mimetic (wehi-601)”. X-ray diffraction, 2 ligands (EQG, NAG). MolNFT v1 #144783 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6C4G
- Type
- protein
- Length
- 394 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6PRR9
- Ligands
- EQG, NAG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 394 | — | Q6PRR9 |
Ligands and binding sites
- EQG · benzyl [(6S,7S,10S,13S,18Z)-18-amino-10-cyclohexyl-6-hydroxy-18-imino-7-(2-methylpropyl)-4,9,12-trioxo-1-phenyl-16-oxa-3,8,11,17-tetraazaoctadecan-13-yl]carbamate · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6C4G · Plasmepsin V from Plasmodium vivax bound to a transition state mimetic (WEHI-601) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6PRR9
- Elsewhere: RCSB PDB 6C4G · PDBe 6C4G · UniProt Q6PRR9
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