MolNFT v1 · #144705 · protein + DNA

MBD2 in complex with a deoxy-oligonucleotide

6C1U: “MBD2 in complex with a deoxy-oligonucleotide”. X-ray diffraction, 1 ligand (UNX). MolNFT v1 #144705 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6C1U
Type: protein + DNA
Length: 321 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9UBB5
Ligands: UNX

Structure

x-ray diffraction · 5 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, F	—	protein	68	—	Q9UBB5
B	—	protein	68	—	Q9UBB5
C, G	—	dna	12	—	—
D, H	—	dna	12	—	—
E	—	protein	69	—	Q9UBB5

Ligands and binding sites

UNX · Unknown atom or ion · ion · 42 copies · chains A, C, D, E, B, G, F, H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6C1U · MBD2 in complex with a deoxy-oligonucleotide · the same entry in another collection · chain H against H, TM-score 1.00
Q9UBB5 · AlphaFold monomer V2.0 prediction for methyl-cpg-binding domain protein 2 (Q9UBB5) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UBB5
Elsewhere: RCSB PDB 6C1U · PDBe 6C1U · UniProt Q9UBB5

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