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MolNFT v1 · #144681 · protein

Cryoem structure of mouse PCDH15-4EC-LHFPL5 complex

6C13: “Cryoem structure of mouse PCDH15-4EC-LHFPL5 complex”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #144681 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6C13
Type
protein
Length
1,084 residues
Chains
2
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q99PJ1
Ligands
NAG, MAN, BMA

Structure

electron microscopy · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B—protein542—Q99PJ1

Ligands and binding sites

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 12 copies · chains A, B
  • MAN · alpha-D-mannopyranose · sugar · 12 copies · chains A, B
  • BMA · beta-D-mannopyranose · sugar · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6C13 · CryoEM structure of mouse PCDH15-4EC-LHFPL5 complex · the same entry in another collection · chain A against A, TM-score 1.00
  • Q99PJ1 · AlphaFold monomer V2.0 prediction for protocadherin-15 (Q99PJ1) · a predicted model of the same protein · chain A against A, TM-score 0.57

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