MolNFT v1 · #144656 · protein
Ternary crystal structure of the 3C8 TCR-CD1C-monoacylglycerol complex
6C09: “Ternary crystal structure of the 3C8 TCR-CD1C-monoacylglycerol complex”. X-ray diffraction, 4 ligands (D10, EKG, NAG). MolNFT v1 #144656 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6C09
- Type
- protein
- Length
- 803 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P29017, P61769
- Ligands
- D10, EKG, NAG, K
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 269 | — | P29017 |
| B | — | protein | 98 | — | P61769 |
| C | — | protein | 192 | — | — |
| D | — | protein | 244 | — | — |
Ligands and binding sites
- D10 · Decane · ligand · 2 copies · chains A, D
- EKG · (2R)-2,3-dihydroxypropyl hexadecanoate · ligand · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- K · Potassium ion · metal · 3 copies · chains A, B, D
- EDO · 1,2-ethanediol · additive · 3 copies · chains C, D
- PEG · Di(hydroxyethyl)ether · additive · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6C09 · Ternary crystal structure of the 3C8 TCR-CD1c-monoacylglycerol complex · the same entry in another collection · chain A against A, TM-score 1.00
- P29017 · AlphaFold monomer V2.0 prediction for T-cell surface glycoprotein CD1C (P29017) · a predicted model of the same protein · chain A against A, TM-score 0.97
- P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29017
- Every structure of UniProt P61769
- Elsewhere: RCSB PDB 6C09 · PDBe 6C09 · UniProt P29017 · UniProt P61769
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