MolNFT v1 · #144636 · protein + DNA
Mtb rnap HOLO/RBPA/FIDAXOMICIN/UPSTREAM fork DNA
6BZO: “Mtb rnap HOLO/RBPA/FIDAXOMICIN/UPSTREAM fork DNA”. Electron microscopy, 3 ligands (FI8, ZN, MG). MolNFT v1 #144636 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6BZO
- Type
- protein + DNA
- Length
- 3,410 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A045J8T1, V9Z879, A0A045J9E2, A0A0T9N9K3, A0A045HD00, A0A045IP01
- Ligands
- FI8, ZN, MG
Structure
electron microscopy · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 226 | — | A0A045J8T1 |
| B | — | protein | 237 | — | A0A045J8T1 |
| C | — | protein | 1111 | — | V9Z879 |
| D | — | protein | 1263 | — | A0A045J9E2 |
| E | — | protein | 83 | — | A0A0T9N9K3 |
| F | — | protein | 326 | — | A0A045HD00 |
| J | — | protein | 107 | — | A0A045IP01 |
| O | — | dna | 31 | — | — |
| P | — | dna | 26 | — | — |
Ligands and binding sites
- FI8 · Fidaxomicin · ligand · chains C, D, F, J
- ZN · Zinc ion · metal · 2 copies · chains D
- MG · Magnesium ion · metal · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6BZO · Mtb RNAP Holo/RbpA/Fidaxomicin/upstream fork DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A045J8T1
- Every structure of UniProt V9Z879
- Every structure of UniProt A0A045J9E2
- Every structure of UniProt A0A0T9N9K3
- Every structure of UniProt A0A045HD00
- Every structure of UniProt A0A045IP01
- Elsewhere: RCSB PDB 6BZO · PDBe 6BZO · UniProt A0A045J8T1 · UniProt V9Z879 · UniProt A0A045J9E2 · UniProt A0A0T9N9K3 · UniProt A0A045HD00 · UniProt A0A045IP01
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