MolNFT v1 · #144256 · protein
Adducts formed after 1 month in the reaction of DICHLORIDO(1,3- dimethylbenzimidazol-2-YLIDENE)(ETA6-P-CYMENE)RUTHENIUM(II) with hewl
6BO2 · Lysozyme C: “Adducts formed after 1 month in the reaction of DICHLORIDO(1,3…”. X-ray diffraction, 4 ligands (E3D, NA, RU), 1 pocket (best druggability 0.29). MolNFT v1 #144256 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6BO2
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme C
- EC
- 3.2.1.17
- UniProt
- P00698
- Ligands
- E3D, NA, RU, CL
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme C (EC 3.2.1.17) | protein | 129 | 41% helix, 11% strand | P00698 |
Ligands and binding sites
- E3D · Dichloro(1,3-dimethyl-1H-benzimidazol-3-ium-2-yl) ruthenium · ligand · 2 copies · chains A
- NA · Sodium ion · metal · chains A
- RU · Ruthenium ion · metal · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.29 | 0.74 | 14 | RU, CL |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 6BO2 · Adducts formed after 1 month in the reaction of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 6BO2 · PDBe 6BO2 · UniProt P00698
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.