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Ligand · E3D

E3D · Dichloro(1,3-dimethyl-1H-benzimidazol-3-ium-2-yl) ruthenium

E3D, Dichloro(1,3-dimethyl-1H-benzimidazol-3-ium-2-yl) ruthenium (C9 H10 Cl2 N2 Ru +1, 318.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues…

Component
E3D
Formula
C9 H10 Cl2 N2 Ru +1
Class
ligand
Structures
4
PDB entries
2

Binding sites

E3D in 4 structures; the first of them:

  • 6BO1 · Mono-adduct formed after 3 days in the reaction of… · E3D A202 · binds ALA11, ARG14, HIS15, SER86, ASP87, ILE88
  • 6BO2 · Adducts formed after 1 month in the reaction of… · E3D A203 · binds ALA11, ARG14, HIS15, ASP87, ILE88
  • 6BO1 · Mono-adduct formed after 3 days in the reaction of DICHLORIDO(1,3… · E3D A202 · binds ALA11, ARG14, HIS15, ASP87, ILE88
  • 6BO2 · Adducts formed after 1 month in the reaction of DICHLORIDO(1,3… · E3D A203 · binds ALA11, ARG14, HIS15, ASP87, ILE88

Residues it binds most

ALA 4, ARG 4, ASP 4, HIS 4, ILE 4, LYS 2, PHE 2, ASN 1, SER 1 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • RU · Ruthenium ion
  • CL · Chloride ion

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