MolNFT v1 · #144216 · protein
Non-receptor protein tyrosine phosphatase SHP2 in complex with allosteric inhibitor SHP844
6BMX · Tyrosine-protein phosphatase non-receptor type 11: “Non-receptor protein tyrosine phosphatase SHP2 in complex with allosteric inhibitor SHP844”. X-ray diffraction, 2 ligands (DYV, PO4), 13 pockets (best druggability 0.69). MolNFT v1…
- PDB
- 6BMX
- Type
- protein
- Length
- 966 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine-protein phosphatase non-receptor type 11
- EC
- 3.1.3.48
- UniProt
- Q06124
- Ligands
- DYV, PO4
- Pockets
- 13 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine-protein phosphatase non-receptor type 11 (EC 3.1.3.48) | protein | 488 | 31% helix, 26% strand | Q06124 |
| B | Tyrosine-protein phosphatase non-receptor type 11 (EC 3.1.3.48) | protein | 478 | 31% helix, 26% strand | Q06124 |
Ligands and binding sites
- DYV · 1-(3-chloro-4-{[1-(2-hydroxy-3-methoxyphenyl)-5-oxo[1, 2,4]triazolo[4,3-a]quinazolin-4(5H)-yl]methyl}benzene-1-carbonyl)-L-proline · ligand · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · 4 copies · chains A, B
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
13 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 808 | 0.69 | 0.75 | 60 | empty |
| 2 | 400 | 0.65 | 0.79 | 35 | PO4 |
| 3 | 289 | 0.60 | 0.79 | 32 | empty |
| 4 | 161 | 0.56 | 0.81 | 24 | PO4 |
| 5 | 113 | 0.52 | 0.82 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 175 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 6BMX · Non-receptor Protein Tyrosine Phosphatase SHP2 in Complex with Allosteric Inhibitor SHP844 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06124
- Elsewhere: RCSB PDB 6BMX · PDBe 6BMX · UniProt Q06124
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.