MolNFT v1 · #144117 · protein

The structure of atzh: a little known member of the atrazine breakdown pathway

6BJU: “The structure of atzh: a little known member of the atrazine breakdown pathway”. X-ray diffraction, 6 pockets (best druggability 0.55). MolNFT v1 #144117 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6BJU
Type: protein
Length: 494 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Atzh
UniProt: A0A1A5DB13
Pockets: 6 · best druggability 0.55

Structure

x-ray diffraction · 4 distinct chains · 29% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Atzh	protein	125	30% helix, 44% strand	A0A1A5DB13
B	Atzh	protein	121	31% helix, 41% strand	A0A1A5DB13
C	Atzh	protein	125	27% helix, 45% strand	A0A1A5DB13
D	Atzh	protein	123	30% helix, 41% strand	A0A1A5DB13

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	243	0.55	0.77	35	empty
2	174	0.53	0.79	21	empty
3	214	0.49	0.75	25	empty
4	147	0.46	0.76	21	empty
5	138	0.43	0.75	22	empty

Interfaces

3 interfaces between chains.

A–B · 1655 Å² buried · 24 hydrogen bonds · protein-protein
C–D · 1637 Å² buried · 24 hydrogen bonds · protein-protein
A–C · 490 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

6BJU · The structure of AtzH: a little known member of the atrazine breakdown pathway · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1A5DB13
Elsewhere: RCSB PDB 6BJU · PDBe 6BJU · UniProt A0A1A5DB13

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