Research workbench
The structure of atzh: a little known member of the atrazine breakdown pathway
Analyse The structure of atzh: a little known member of the atrazine breakdown pathway in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6BJU
- Type
- protein
- Length
- 494 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Atzh
- UniProt
- A0A1A5DB13
- Pockets
- 6 · best druggability 0.55
Structure
x-ray diffraction · 4 distinct chains · 29% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Atzh | protein | 125 | 30% helix, 44% strand | A0A1A5DB13 |
| B | Atzh | protein | 121 | 31% helix, 41% strand | A0A1A5DB13 |
| C | Atzh | protein | 125 | 27% helix, 45% strand | A0A1A5DB13 |
| D | Atzh | protein | 123 | 30% helix, 41% strand | A0A1A5DB13 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 243 | 0.55 | 0.77 | 35 | empty |
| 2 | 174 | 0.53 | 0.79 | 21 | empty |
| 3 | 214 | 0.49 | 0.75 | 25 | empty |
| 4 | 147 | 0.46 | 0.76 | 21 | empty |
| 5 | 138 | 0.43 | 0.75 | 22 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1655 Ų buried · 24 hydrogen bonds · protein-protein
- C–D · 1637 Ų buried · 24 hydrogen bonds · protein-protein
- A–C · 490 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6BJU · The structure of AtzH: a little known member of the atrazine breakdown pathway · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1A5DB13
- Elsewhere: RCSB PDB 6BJU · PDBe 6BJU · UniProt A0A1A5DB13
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