MolNFT v1 · #144084 · protein
HLA-DRB1 in complex with citrullinated vimentin peptide
6BIR: “HLA-DRB1 in complex with citrullinated vimentin peptide”. X-ray diffraction, 2 ligands (CIR, NAG). MolNFT v1 #144084 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6BIR
- Type
- protein
- Length
- 375 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P01903, P79552
- Ligands
- CIR, NAG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 177 | — | P01903 |
| B | — | protein | 186 | — | P79552 |
| C | — | protein | 12 | — | — |
Ligands and binding sites
- CIR · Citrulline · ligand · chains A, B, C
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6BIR · HLA-DRB1 in complex with citrullinated Vimentin peptide · the same entry in another collection · chain A against A, TM-score 1.00
- P01903 · AlphaFold monomer V2.0 prediction for HLA class II histocompatibility antigen, dr alpha… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01903
- Every structure of UniProt P79552
- Elsewhere: RCSB PDB 6BIR · PDBe 6BIR · UniProt P01903 · UniProt P79552
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