MolNFT v1 · #143717 · protein
Truncated strand 10-less green fluorescent protein
6B7T · Green fluorescent PROTEIN,GREEN fluorescent protein: “Truncated strand 10-less green fluorescent protein”. X-ray diffraction, 1 ligand (GYS), 5 pockets (best druggability 0.75). MolNFT v1 #143717 on GenesisL1: 3D structure, binding…
- PDB
- 6B7T
- Type
- protein
- Length
- 410 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Green fluorescent PROTEIN,GREEN fluorescent protein
- UniProt
- P42212
- Ligands
- GYS
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent PROTEIN,GREEN fluorescent protein | protein | 207 | 11% helix, 56% strand | P42212 |
| B | Green fluorescent PROTEIN,GREEN fluorescent protein | protein | 203 | 9% helix, 56% strand | P42212 |
Ligands and binding sites
- GYS · [(4Z)-2-(1-amino-2-hydroxyethyl)-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.75 | 0.98 | 25 | GYS |
| 2 | 72 | 0.73 | 0.97 | 24 | GYS |
| 3 | 137 | 0.47 | 0.78 | 35 | empty |
| 4 | 71 | 0.42 | 0.81 | 21 | empty |
| 5 | 135 | 0.37 | 0.73 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 805 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 cofactor (chromophore).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42212
- Elsewhere: RCSB PDB 6B7T · PDBe 6B7T · UniProt P42212
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