MolNFT v1 · #143657 · protein

Impase (AF2372) with 25 mm asp

6B63 · Fructose-1,6-BISPHOSPHATASE/INOSITOL-1-monophosphatase: “Impase (AF2372) with 25 mm asp”. X-ray diffraction, 4 ligands (CU7, MG, PO4), 4 pockets (best druggability 0.69). MolNFT v1 #143657 on GenesisL1: 3D structure, binding sites…

PDB: 6B63
Type: protein
Length: 504 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fructose-1,6-BISPHOSPHATASE/INOSITOL-1-monophosphatase
EC: 3.1.3.11, 3.1.3.25
UniProt: O30298
Ligands: CU7, MG, PO4, SO4
Pockets: 4 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Fructose-1,6-BISPHOSPHATASE/INOSITOL-1-monophosphatase (EC 3.1.3.11, 3.1.3.25)	protein	252	31% helix, 30% strand	O30298

Ligands and binding sites

CU7 · (2R)-2,3-dihydroxypropyl (2S)-2,3-dihydroxypropyl hydrogen phosphate · ligand · 4 copies · chains A, B
MG · Magnesium ion · metal · 6 copies · chains A, B
PO4 · Phosphate ion · ion · 2 copies · chains A, B
SO4 · Sulfate ion · ion · 2 copies · chains A, B
EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	428	0.69	0.81	44	CU7, PO4, MG
2	405	0.69	0.81	45	CU7, PO4, MG
3	72	0.29	0.73	13	empty
4	72	0.29	0.73	13	empty

Interfaces

1 interface between chains.

A–B · 1190 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

6B63 · IMPase (AF2372) with 25 mM Asp · the same entry in another collection · chain A against A, TM-score 1.00
O30298 · AlphaFold monomer V2.0 prediction for fructose-1,6-BISPHOSPHATASE/INOSITOL-1-monophosphata… · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O30298
Elsewhere: RCSB PDB 6B63 · PDBe 6B63 · UniProt O30298

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.