MolNFT v1 · #143471 · protein
Crystal structure of the cleavage-independent prefusion HIV env glycoprotein trimer of the clade a BG505 isolate (nfl construct) in complex with fabs PGT122 and PGV19 at 3.39 a
6B0N: “Crystal structure of the cleavage-independent prefusion HIV env glycoprotein trimer of the clade a BG505…”. X-ray diffraction, 3 ligands (NAG, MAN, BMA). MolNFT v1 #143471 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6B0N
- Type
- protein
- Length
- 1,405 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6, Q2N0S9
- Ligands
- NAG, MAN, BMA
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | — | protein | 171 | — | — |
| E | — | protein | 182 | — | — |
| G | — | protein | 610 | — | Q2N0S6, Q2N0S9 |
| H | — | protein | 232 | — | — |
| L | — | protein | 210 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 36 copies · chains G, D, E, H, L
- MAN · alpha-D-mannopyranose · sugar · 32 copies · chains L, G, E, H
- BMA · beta-D-mannopyranose · sugar · 10 copies · chains H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6B0N · Crystal structure of the cleavage-independent prefusion HIV Env glycoprotein trimer of… · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Every structure of UniProt Q2N0S9
- Elsewhere: RCSB PDB 6B0N · PDBe 6B0N · UniProt Q2N0S6 · UniProt Q2N0S9
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