MolNFT v1 · #143230 · protein
Crystal structure of the human coronavirus 229E spike protein receptor binding domain in complex with human aminopeptidase N
6ATK: “Crystal structure of the human coronavirus 229E spike protein receptor binding domain in complex with human…”. X-ray diffraction, 2 ligands (NAG, ZN). MolNFT v1 #143230 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ATK
- Type
- protein
- Length
- 2,898 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P15144, P15423
- Ligands
- NAG, ZN
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 892 | — | P15144 |
| C | — | protein | 891 | — | P15144 |
| E | — | protein | 134 | — | P15423 |
| D | — | protein | 78 | — | P15423 |
| F | — | protein | 11 | — | P15423 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 25 copies · chains A, B, C, E, D
- ZN · Zinc ion · metal · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ATK · Crystal structure of the human coronavirus 229E spike protein receptor binding domain in… · the same entry in another collection · chain F against F, TM-score 1.00
- P15144 · AlphaFold monomer V2.0 prediction for aminopeptidase N (P15144) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15144
- Every structure of UniProt P15423
- Elsewhere: RCSB PDB 6ATK · PDBe 6ATK · UniProt P15144 · UniProt P15423
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