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MolNFT v1 · #14311 · protein

Crystal structure of 2-CO(2+)-insulin at 1.2A resolution

1M5A · Insulin a chain: “Crystal structure of 2-CO(2+)-insulin at 1.2A resolution”. X-ray diffraction, 1 ligand (CO). MolNFT v1 #14311 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
1M5A
Type
protein
Length
102 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Insulin a chain; Insulin B chain
UniProt
P01315
Ligands
CO

Structure

x-ray diffraction · 2 distinct chains · 55% helix, 16% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A, CInsulin a chainprotein2167% helix, 14% strandP01315
B, DInsulin B chainprotein3047% helix, 17% strandP01315

Ligands and binding sites

  • CO · Cobalt (II) ion · metal · 2 copies · chains B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

5 interfaces between chains.

  • A–B · 900 Ų buried · 16 hydrogen bonds · protein-protein
  • C–D · 828 Ų buried · 15 hydrogen bonds · protein-protein
  • B–D · 609 Ų buried · 7 hydrogen bonds · protein-protein
  • B–C · 58 Ų buried · 0 hydrogen bonds · protein-protein
  • A–D · 50 Ų buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

  • 1M5A · Crystal Structure of 2-Co(2+)-Insulin at 1.2A Resolution · the same entry in another collection · chain A against A, TM-score 1.00
  • P01315 · AlphaFold monomer V2.0 prediction for insulin (P01315) · a predicted model of the same protein · chain A against A, TM-score 0.24

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