MolNFT v1 · #142948 · protein
The PDZ tandem fragment of a. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 267
6AKQ · PDZ tandem fragment of a. aeolicus site-2 protease homolog…: “The PDZ tandem fragment of a. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 267”. X-ray diffraction, 1 ligand (SNN), 3 pockets (best…
- PDB
- 6AKQ
- Type
- protein
- Length
- 185 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PDZ tandem fragment of a. aeolicus site-2 protease homolog with the pa tag insertion
- EC
- 3.4.24.-
- UniProt
- O67776
- Ligands
- SNN
- Pockets
- 3 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PDZ tandem fragment of a. aeolicus site-2 protease homolog with the pa tag insertion (EC 3.4.24.-) | protein | 185 | 21% helix, 37% strand | O67776 |
Ligands and binding sites
- SNN · L-3-aminosuccinimide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.51 | 0.79 | 20 | empty |
| 2 | 167 | 0.45 | 0.75 | 24 | empty |
| 3 | 81 | 0.42 | 0.79 | 15 | empty |
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 6AKQ · The PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the… · the same entry in another collection · chain A against A, TM-score 1.00
- O67776 · AlphaFold monomer V2.0 prediction for putative zinc metalloprotease AQ_1964 (O67776) · a predicted model of the same protein · chain A against A, TM-score 0.59
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O67776
- Elsewhere: RCSB PDB 6AKQ · PDBe 6AKQ · UniProt O67776
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