Research workbench
The PDZ tandem fragment of a. aeolicus S2P homolog with the PA12 tag inserted between the residues 263 and 267
Analyse The PDZ tandem fragment of a. aeolicus S2P homolog with the PA12 tag inserted… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6AKQ
- Type
- protein
- Length
- 185 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PDZ tandem fragment of a. aeolicus site-2 protease homolog with the pa tag insertion
- EC
- 3.4.24.-
- UniProt
- O67776
- Ligands
- SNN
- Pockets
- 3 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PDZ tandem fragment of a. aeolicus site-2 protease homolog with the pa tag insertion (EC 3.4.24.-) | protein | 185 | 21% helix, 37% strand | O67776 |
Ligands and binding sites
- SNN · L-3-aminosuccinimide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.51 | 0.79 | 20 | empty |
| 2 | 167 | 0.45 | 0.75 | 24 | empty |
| 3 | 81 | 0.42 | 0.79 | 15 | empty |
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 6AKQ · The PDZ tandem fragment of A. aeolicus S2P homolog with the PA12 tag inserted between the… · the same entry in another collection · chain A against A, TM-score 1.00
- O67776 · AlphaFold monomer V2.0 prediction for putative zinc metalloprotease AQ_1964 (O67776) · a predicted model of the same protein · chain A against A, TM-score 0.59
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O67776
- Elsewhere: RCSB PDB 6AKQ · PDBe 6AKQ · UniProt O67776
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