MolNFT v1 · #142915 · protein

Complex form of uracil DNA glycosylase X and deoxyuridine monophosphate.

6AJP · Uracil DNA glycosylase superfamily protein: “Complex form of uracil DNA glycosylase X and deoxyuridine monophosphate.”. X-ray diffraction, 2 ligands (DU, SF4), 1 pocket (best druggability 0.59). MolNFT v1 #142915 on GenesisL1: 3D…

PDB: 6AJP
Type: protein
Length: 206 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uracil DNA glycosylase superfamily protein
UniProt: A0QP43
Ligands: DU, SF4
Pockets: 1 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uracil DNA glycosylase superfamily protein	protein	206	43% helix, 13% strand	A0QP43

Ligands and binding sites

DU · 2'-deoxyuridine-5'-monophosphate · ligand · chains A
SF4 · Iron/sulfur cluster · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	204	0.59	0.81	27	DU

Compared structures

6AJP · Complex form of Uracil DNA glycosylase X and deoxyuridine monophosphate. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0QP43
Elsewhere: RCSB PDB 6AJP · PDBe 6AJP · UniProt A0QP43

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