MolNFT v1 · #142880 · protein

Crystal structure at 1.3 ångströms resolution of a novel udg, udgx, from mycobacterium smegmatis

6AIL · Uracil DNA glycosylase X: “Crystal structure at 1.3 ångströms resolution of a novel udg, udgx, from mycobacterium smegmatis”. X-ray diffraction, 1 ligand (SF4), 1 pocket (best druggability 0.62). MolNFT v1 #142880 on GenesisL1: 3D…

PDB: 6AIL
Type: protein
Length: 206 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uracil DNA glycosylase X
UniProt: A0QP43
Ligands: SF4
Pockets: 1 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uracil DNA glycosylase X	protein	206	42% helix, 12% strand	A0QP43

Ligands and binding sites

SF4 · Iron/sulfur cluster · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	212	0.62	0.82	28	empty

Compared structures

6AIL · CRYSTAL STRUCTURE AT 1.3 ANGSTROMS RESOLUTION OF A NOVEL UDG, UdgX, FROM Mycobacterium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0QP43
Elsewhere: RCSB PDB 6AIL · PDBe 6AIL · UniProt A0QP43

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