MolNFT v1 · #142878 · protein
Cyclodextrin glycosyltransferase from paenibacillus macerans mutant N603D
6AIJ · Cyclomaltodextrin glucanotransferase: “Cyclodextrin glycosyltransferase from paenibacillus macerans mutant N603D”. X-ray diffraction, 1 ligand (CA), 7 pockets (best druggability 0.63). MolNFT v1 #142878 on GenesisL1: 3D structure…
- PDB
- 6AIJ
- Type
- protein
- Length
- 687 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyclomaltodextrin glucanotransferase
- EC
- 2.4.1.19
- UniProt
- P04830
- Ligands
- CA
- Pockets
- 7 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyclomaltodextrin glucanotransferase (EC 2.4.1.19) | protein | 687 | 23% helix, 31% strand | P04830 |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 372 | 0.63 | 0.78 | 31 | empty |
| 2 | 207 | 0.60 | 0.81 | 30 | empty |
| 3 | 61 | 0.60 | 0.90 | 17 | empty |
| 4 | 164 | 0.49 | 0.77 | 22 | empty |
| 5 | 71 | 0.34 | 0.76 | 20 | empty |
Compared structures
- 6AIJ · Cyclodextrin glycosyltransferase from Paenibacillus macerans mutant N603D · the same entry in another collection · chain A against A, TM-score 1.00
- P04830 · AlphaFold monomer V2.0 prediction for cyclomaltodextrin glucanotransferase (P04830) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04830
- Elsewhere: RCSB PDB 6AIJ · PDBe 6AIJ · UniProt P04830
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.