MolNFT v1 · #142876 · protein

Crystal structure of PCNA1 from aeropyrum pernix

6AIG · DNA polymerase sliding clamp 1: “Crystal structure of PCNA1 from aeropyrum pernix”. X-ray diffraction, 1 pocket (best druggability 0.44). MolNFT v1 #142876 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6AIG
Type: protein
Length: 258 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA polymerase sliding clamp 1
UniProt: Q9YFT8
Pockets: 1 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 19% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA polymerase sliding clamp 1	protein	258	19% helix, 44% strand	Q9YFT8

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	142	0.44	0.76	24	empty

Compared structures

6AIG · Crystal structure of PCNA1 from Aeropyrum pernix · the same entry in another collection · chain A against A, TM-score 1.00
Q9YFT8 · AlphaFold monomer V2.0 prediction for DNA polymerase sliding clamp 1 (Q9YFT8) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9YFT8
Elsewhere: RCSB PDB 6AIG · PDBe 6AIG · UniProt Q9YFT8

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