MolNFT v1 · #289904 · protein

AlphaFold monomer V2.0 prediction for DNA polymerase sliding clamp 1 (Q9YFT8)

Q9YFT8: “AlphaFold monomer V2.0 prediction for DNA polymerase sliding clamp 1 (Q9YFT8)”. 2 pockets (best druggability 0.35). MolNFT v1 #289904 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: Q9YFT8
Type: protein
Length: 247 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x32F84e4b669FE2B552876B642b3D7D3C3c2FB08D
Molecule: DNA polymerase sliding clamp 1
UniProt: Q9YFT8
Pockets: 2 · best druggability 0.35

Structure

1 distinct chain · 20% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA polymerase sliding clamp 1	protein	247	20% helix, 45% strand	Q9YFT8

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	62	0.35	0.77	17	empty
2	65	0.33	0.76	16	empty

Compared structures

6AIG · Crystal structure of PCNA1 from Aeropyrum pernix · an experimental structure of the same protein · chain A against A, TM-score 0.96
6AIG · Crystal structure of PCNA1 from aeropyrum pernix · an experimental structure of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9YFT8
Elsewhere: UniProt Q9YFT8 · AlphaFold DB Q9YFT8

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