MolNFT v1 · #142832 · protein

Aspergillus fumigatus AF293 ndk

6AGY · Nucleoside diphosphate kinase: “Aspergillus fumigatus AF293 ndk”. X-ray diffraction, 1 pocket (best druggability 0.48). MolNFT v1 #142832 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6AGY
Type: protein
Length: 149 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nucleoside diphosphate kinase
EC: 2.7.4.6
UniProt: Q7Z8P9
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleoside diphosphate kinase (EC 2.7.4.6)	protein	149	48% helix, 16% strand	Q7Z8P9

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	185	0.48	0.76	26	empty

Compared structures

6AGY · Aspergillus fumigatus Af293 NDK · the same entry in another collection · chain A against A, TM-score 1.00
Q7Z8P9 · AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (Q7Z8P9) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7Z8P9
Elsewhere: RCSB PDB 6AGY · PDBe 6AGY · UniProt Q7Z8P9

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