MolNFT v1 · #142666 · protein
Sugar-binding and crystallographic studies of an arabinose-binding protein mutant (MET108LEU) which exhibits enhanced affinity and altered specificity
6ABP · L-arabinose-binding protein: “Sugar-binding and crystallographic studies of an arabinose-binding protein mutant (MET108LEU) which exhibits…”. X-ray diffraction, 2 ligands (ARB, ARA), 2 pockets (best druggability 0.35). MolNFT v1…
- PDB
- 6ABP
- Type
- protein
- Length
- 305 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-arabinose-binding protein
- UniProt
- P02924
- Ligands
- ARB, ARA
- Pockets
- 2 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-arabinose-binding protein | protein | 305 | 48% helix, 22% strand | P02924 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.35 | 0.77 | 13 | empty |
| 2 | 67 | 0.31 | 0.75 | 15 | empty |
Compared structures
- 6ABP · Sugar-binding and crystallographic studies of an arabinose-binding protein mutant… · the same entry in another collection · chain A against A, TM-score 1.00
- P02924 · AlphaFold monomer V2.0 prediction for L-arabinose-binding periplasmic protein (P02924) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02924
- Elsewhere: RCSB PDB 6ABP · PDBe 6ABP · UniProt P02924
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