MolNFT v1 · #142599 · protein
T4 dcmp hydroxymethylase structure solved by I-sad using a home source
6A9B · Deoxycytidylate 5-hydroxymethyltransferase: “T4 dcmp hydroxymethylase structure solved by I-sad using a home source”. X-ray diffraction, 2 ligands (IOD, PO4), 2 pockets (best druggability 0.70). MolNFT v1 #142599 on GenesisL1: 3D…
- PDB
- 6A9B
- Type
- protein
- Length
- 246 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Deoxycytidylate 5-hydroxymethyltransferase
- EC
- 2.1.2.8
- UniProt
- P08773
- Ligands
- IOD, PO4
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Deoxycytidylate 5-hydroxymethyltransferase (EC 2.1.2.8) | protein | 246 | 40% helix, 22% strand | P08773 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 463 | 0.70 | 0.81 | 36 | PO4 |
| 2 | 55 | 0.37 | 0.79 | 15 | empty |
Compared structures
- 6A9B · T4 dCMP hydroxymethylase structure solved by I-SAD using a home source · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08773
- Elsewhere: RCSB PDB 6A9B · PDBe 6A9B · UniProt P08773
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.