MolNFT v1 · #142508 · protein
Crystal structure of putative iron-sulfur cluster assembly scaffold protein for suf system (fisufu) from thermophilic fervidobacterium islandicum aw-1
6A6F · Iron-sulfur cluster assembly scaffold protein nifu: “Crystal structure of putative iron-sulfur cluster assembly scaffold protein for suf system (fisufu) from…”. X-ray diffraction, 2 ligands (NI, ZN), 1 pocket (best druggability…
- PDB
- 6A6F
- Type
- protein
- Length
- 272 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Iron-sulfur cluster assembly scaffold protein nifu
- UniProt
- A0A1B0VLW5
- Ligands
- NI, ZN
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Iron-sulfur cluster assembly scaffold protein nifu | protein | 136 | 51% helix, 20% strand | A0A1B0VLW5 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · 6 copies · chains A, B
- ZN · Zinc ion · metal · 2 copies · chains A, B
- GOL · Glycerol · additive · 5 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 85 | 0.69 | 0.94 | 35 | empty |
Interfaces
1 interface between chains.
- A–B · 750 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6A6F · Crystal structure of Putative iron-sulfur cluster assembly scaffold protein for SUF… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1B0VLW5
- Elsewhere: RCSB PDB 6A6F · PDBe 6A6F · UniProt A0A1B0VLW5
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