MolNFT v1 · #142433 · protein

Oligoribonuclease (orn) from colwellia psychrerythraea strain 34H

6A4A: “Oligoribonuclease (orn) from colwellia psychrerythraea strain 34H”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.38). MolNFT v1 #142433 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6A4A
Type: protein
Length: 180 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Oligoribonuclease
EC: 3.1.-.-
UniProt: Q47VZ4
Ligands: MG
Pockets: 2 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Oligoribonuclease (EC 3.1.-.-)	protein	180	46% helix, 18% strand	Q47VZ4

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	145	0.38	0.73	26	MG
2	51	0.27	0.73	13	empty

Compared structures

6A4A · Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H · the same entry in another collection · chain A against A, TM-score 1.00
Q47VZ4 · AlphaFold monomer V2.0 prediction for oligoribonuclease (Q47VZ4) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q47VZ4
Elsewhere: RCSB PDB 6A4A · PDBe 6A4A · UniProt Q47VZ4

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