MolNFT v1 · #142248 · protein
Crystal structure of cert start domain in complex with compound E16A
5ZYJ: “Crystal structure of cert start domain in complex with compound E16A”. X-ray diffraction, 1 ligand (9ML). MolNFT v1 #142248 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZYJ
- Type
- protein
- Length
- 228 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9Y5P4
- Ligands
- 9ML
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 228 | — | Q9Y5P4 |
Ligands and binding sites
- 9ML · 2-[4-[4-pentyl-3-[(1~{S},2~{R})-2-pyridin-2-ylcyclopropyl]phenyl]phenyl]sulfonylethanol · ligand · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ZYJ · Crystal structure of CERT START domain in complex with compound E16A · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y5P4 · AlphaFold monomer V2.0 prediction for ceramide transfer protein (Q9Y5P4) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y5P4
- Elsewhere: RCSB PDB 5ZYJ · PDBe 5ZYJ · UniProt Q9Y5P4
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