MolNFT v1 · #142213 · protein

Crystal structure of arabidopsis thaliana AGDP1 AGD34

5ZWZ · Agenet domain-containing protein: “Crystal structure of arabidopsis thaliana AGDP1 AGD34”. X-ray diffraction, 1 pocket (best druggability 0.53). MolNFT v1 #142213 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ZWZ
Type: protein
Length: 146 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Agenet domain-containing protein
UniProt: Q500V5
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 10% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Agenet domain-containing protein	protein	146	10% helix, 50% strand	Q500V5

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	204	0.53	0.78	29	empty

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

5ZWZ · Crystal structure of Arabidopsis thaliana AGDP1 AGD34 · the same entry in another collection · chain A against A, TM-score 1.00
Q500V5 · AlphaFold monomer V2.0 prediction for protein agenet domain (agd)-containing P1 (Q500V5) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q500V5
Elsewhere: RCSB PDB 5ZWZ · PDBe 5ZWZ · UniProt Q500V5

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