MolNFT v1 · #142080 · protein
Sufs from bacillus subtilis soaked with L-cysteine for 63 sec
5ZSK · Cysteine desulfurase sufs: “Sufs from bacillus subtilis soaked with L-cysteine for 63 sec”. X-ray diffraction, 1 ligand (PDA), 3 pockets (best druggability 0.45). MolNFT v1 #142080 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5ZSK
- Type
- protein
- Length
- 410 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cysteine desulfurase sufs
- EC
- 2.8.1.7
- UniProt
- O32164
- Ligands
- PDA
- Pockets
- 3 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cysteine desulfurase sufs (EC 2.8.1.7) | protein | 410 | 44% helix, 18% strand | O32164 |
Ligands and binding sites
- PDA · 2-[(3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-ylmethyl)-amino]-propionic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 90 | 0.45 | 0.80 | 24 | PDA |
| 2 | 82 | 0.40 | 0.78 | 18 | empty |
| 3 | 73 | 0.34 | 0.75 | 22 | empty |
Modifications
Observed in the structure: 1 modified (oxidation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O32164
- Elsewhere: RCSB PDB 5ZSK · PDBe 5ZSK · UniProt O32164
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