MolNFT v1 · #142073 · protein + RNA
Crystal structure of monkey TLR7 in complex with imdq and gguugg
5ZSD: “Crystal structure of monkey TLR7 in complex with imdq and gguugg”. X-ray diffraction, 3 ligands (IDQ, NAG, SO4). MolNFT v1 #142073 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZSD
- Type
- protein + RNA
- Length
- 1,553 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B3Y653
- Ligands
- IDQ, NAG, SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 774 | — | B3Y653 |
| A | — | protein | 773 | — | B3Y653 |
| C, D | — | rna | 3 | — | — |
Ligands and binding sites
- IDQ · 1-[[4-(aminomethyl)phenyl]methyl]-2-butyl-imidazo[4,5-c]quinolin-4-amine · ligand · 2 copies · chains B, A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 19 copies · chains B, A
- SO4 · Sulfate ion · ion · 14 copies · chains B, A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ZSD · Crystal structure of monkey TLR7 in complex with IMDQ and GGUUGG · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3Y653
- Elsewhere: RCSB PDB 5ZSD · PDBe 5ZSD · UniProt B3Y653
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